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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48535345_48543324_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48535345 - 48543324
Intron Length:
7980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGATC
5'SS Class:
major
3'SS Sequence:
TTCCTTTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTCCTTTCATC
Flanking Amino Acid:
DTHVEVPLDQRPAETVDEEE
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71.4
38.2
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
81.2
0.7
0.8
81.7
28.7
Minor 5ss
43
-0.8
3.1
60.3
44.4
Minor BPS
63
0.39
1.7
75.34
35.5

Associated Gene:

Gene:
DCDC2
Ensembl Gene ID:
ENSAPLG00000011996
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012484
48486497 - 48544872
58376