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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48556710_48557656_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48556710 - 48557656
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTACCC
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CATTGTTTAATT
Flanking Amino Acid:
PSRWSSTFWKVGLISGTAFM
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
56.5
41.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
32.2
-2
3.2
44
43.2
Minor BPS
62.8
0.48
1.8
76.34
41.1

Associated Gene:

Gene:
NRSN1
Ensembl Gene ID:
ENSAPLG00000029072
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036348
48555629 - 48557854
2226