Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48563953_48566075_F

Intron Information:

Intron Rank:

124602

Intron Class:

major

Intron Phase:

Intron Coordinates:

48563953 - 48566075

Intron Length:

2123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAA

U12 Branch Point Sequence:

TTTTTTTTTCCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

74.4

41.9

Major BPS

70.6

0.51

0.9

61.4

36.2

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

43.9

-0.7

2.8

58.1

46.5

Minor BPS

44.4

-0.4

3.6

74.12

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017173

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039042

48563393 - 48577769

14377