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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48575913_48577063_F

Intron Information:

Intron Rank:
124605
Intron Class:
major
Intron Phase:
Intron Coordinates:
48575913 - 48577063
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
ATGCAGTCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
54
0.1
1
59.7
32.6
Major PPT
74.2
0.54
1
74.3
36.5
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
39
-0.7
2.4
57.13
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017173
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039042
48563393 - 48577769
14377