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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48614832_48615853_F

Intron Information:

Intron Rank:
138480
Intron Class:
major
Intron Phase:
Intron Coordinates:
48614832 - 48615853
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGTC
5'SS Class:
major
3'SS Sequence:
CCTTTTGCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTATCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
64.4
40.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
82.6
0.73
0.8
80.3
31.7
Minor 5ss
39.5
-1.2
3.7
59.1
45.6
Minor BPS
71.1
0.74
1.6
88.37
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031114
48614673 - 48645626
30954