About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4862506_4863281_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4862506 - 4863281
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
GTGGTCTCAGCG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
74.5
0.55
0.9
66
40.8
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
44.5
-0.5
1.9
47.76
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005271
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005459
4862070 - 4873216
11147