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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4863413_4863900_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4863413 - 4863900
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCCA
5'SS Class:
major
3'SS Sequence:
CCAATCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
CGCGCTCCAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
61.2
39
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
69.7
0.44
0.9
62.1
34.4
Minor 5ss
25.7
-2.8
3
31.1
42.4
Minor BPS
40.9
-0.7
1.8
43.18
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005271
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005459
4862070 - 4873216
11147