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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4864050_4864385_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4864050 - 4864385
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TTGTTGGTAATG
Flanking Amino Acid:
MEDLGQKDPGTDPRTAF
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
79.2
0.66
1
76.8
37.3
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
44.8
-0.5
2.6
57.85
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005271
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005459
4862070 - 4873216
11147