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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4864475_4865444_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4864475 - 4865444
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACTCAC
5'SS Class:
major
3'SS Sequence:
TCTTCTCACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTCTTCTCACCC
Flanking Amino Acid:
ARLQYYFWDTNLVASYKETR
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
63.6
42.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.9
0.6
0.8
69.8
35.6
Minor 5ss
40.5
-1.1
2.9
53.9
43.3
Minor BPS
49.6
-0
1.9
61.43
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005271
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005459
4862070 - 4873216
11147