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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4866774_4867387_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4866774 - 4867387
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGACCC
5'SS Class:
major
3'SS Sequence:
CTTTGTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCTTCTTCAATC
Flanking Amino Acid:
KERGANDSTYWVLFELLWRD
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
56.3
41.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
77.9
0.63
0.9
72.9
37.4
Minor 5ss
32.3
-2
3.2
40.4
39.6
Minor BPS
67.8
0.54
1.5
74.09
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005271
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005459
4862070 - 4873216
11147