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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48678069_48683709_F

Intron Information:

Intron Rank:
142500
Intron Class:
major
Intron Phase:
Intron Coordinates:
48678069 - 48683709
Intron Length:
5641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCTTGCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
59.6
42.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
44.5
-0.6
2.8
52
45.9
Minor BPS
45.3
-0.2
2.2
70.37
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026788
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025858
48649831 - 48683898
34068