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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4868550_4869501_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4868550 - 4869501
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CGCCTTTTATCT
Flanking Amino Acid:
KDLQLFDCWKEGKTGVPFVD
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
78
38.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.8
0.83
0.7
81.6
30.3
Minor 5ss
30.5
-2.2
2.5
34.7
40.9
Minor BPS
48.8
-0
1.6
60.95
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005271
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005459
4862070 - 4873216
11147