About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48706674_48709679_F

Intron Information:

Intron Rank:
136693
Intron Class:
major
Intron Phase:
Intron Coordinates:
48706674 - 48709679
Intron Length:
3006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTGTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGATTTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.7
0.8
0.9
84.8
35.4
Minor 5ss
36.8
-1.5
3.4
53.8
43.7
Minor BPS
49.2
0.02
1.7
64.7
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023606
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043849
48698684 - 48709823
11140
ENSAPLT00000018879
48695476 - 48709823
14348