Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4871108_4871990_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4871108 - 4871990

Intron Length:

883

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGGAC

U12 Branch Point Sequence:

CGGTTTTGGACC

Flanking Amino Acid:

IKQGLDYDGNGDFVRLWLPE

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

1.2

30.2

Major BPS

61.5

0.29

1.4

63.1

44.5

Major PPT

85.4

0.8

79.9

32.1

Minor 5ss

43.2

-0.7

2.9

57.4

40.7

Minor BPS

48.5

-0.1

1.5

53.82

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005271

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005459

4862070 - 4873216

11147