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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4872168_4872392_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4872168 - 4872392
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTCTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
AGTGTCTCAGTG
Flanking Amino Acid:
EWSRHINQRLQGRSPHPRGR
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
75.3
33.8
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
85.3
0.79
0.7
79.9
25.4
Minor 5ss
35.5
-1.6
2.9
49.8
40.3
Minor BPS
43.7
-0.6
1.8
46.23
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005271
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005459
4862070 - 4873216
11147