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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48737363_48764745_F

Intron Information:

Intron Rank:
143144
Intron Class:
major
Intron Phase:
Intron Coordinates:
48737363 - 48764745
Intron Length:
27383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CAATATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
75.1
40.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
43.2
-0.7
3.2
69.3
41.2
Minor BPS
48.5
-0
1.7
62.6
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038254
48736691 - 48766128
29438