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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48751920_48783195_F

Intron Information:

Intron Rank:
135778
Intron Class:
major
Intron Phase:
Intron Coordinates:
48751920 - 48783195
Intron Length:
31276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTAT
5'SS Class:
major
3'SS Sequence:
TTTATTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTCAACTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.2
32.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
83.8
0.76
0.7
80.2
31.8
Minor 5ss
38.6
-1.3
3
54.7
43.6
Minor BPS
59
0.36
1.8
78.4
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023111
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047355
48731953 - 48783438
51486
ENSAPLT00000025497
48731953 - 48783438
51486