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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48797190_48797883_F

Intron Information:

Intron Rank:
131984
Intron Class:
major
Intron Phase:
Intron Coordinates:
48797190 - 48797883
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TTTACCATATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
85.5
0.8
0.8
83.8
31.2
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
58.9
0.26
1.9
76.51
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020869
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027655
48600566 - 48798641
198076