About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4894653_4916481_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4894653 - 4916481
Intron Length:
21829

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCCCCAGCC
5'SS Class:
major
3'SS Sequence:
TTATTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTATTT
Flanking Amino Acid:
AFPFIVLLSRGSVLDIIKHI
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.3
60.5
39.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.2
0.77
0.7
78.1
36.2
Minor 5ss
21.3
-3.3
4
34.5
41.3
Minor BPS
62.4
0.47
1.9
82.13
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003878
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004054
4893703 - 4948969
55267