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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48992220_48993179_F

Intron Information:

Intron Rank:
141929
Intron Class:
major
Intron Phase:
Intron Coordinates:
48992220 - 48993179
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTCCCTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.9
81.3
36
Major BPS
83
0.82
0.8
82
24.9
Major PPT
68.4
0.41
1
67.7
32.9
Minor 5ss
23.7
-3
4.2
37.5
47.2
Minor BPS
61.8
0.23
1.9
69.58
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026409
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025601
48982222 - 48993633
11412