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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49041960_49053467_F

Intron Information:

Intron Rank:
151297
Intron Class:
major
Intron Phase:
Intron Coordinates:
49041960 - 49053467
Intron Length:
11508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTTTTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73
0.52
1
69.8
39.5
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
58.3
0.24
1.5
67.73
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031229
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039982
49041507 - 49056638
15132