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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49053542_49053626_F

Intron Information:

Intron Rank:
151298
Intron Class:
major
Intron Phase:
Intron Coordinates:
49053542 - 49053626
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TCTGCTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TCTGCTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
69
0.47
1
69.9
32.6
Major PPT
74.2
0.54
0.9
69.6
35.5
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
61.8
0.37
1.7
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031229
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039982
49041507 - 49056638
15132