About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49053888_49056368_F

Intron Information:

Intron Rank:
151299
Intron Class:
major
Intron Phase:
Intron Coordinates:
49053888 - 49056368
Intron Length:
2481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
TTTTTTTTAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78
38.6
Major BPS
59.7
0.24
1
67
29.8
Major PPT
90.9
0.92
0.7
89.4
25.5
Minor 5ss
37.4
-1.4
3
42
44.5
Minor BPS
72.3
0.7
1.4
82.59
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031229
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039982
49041507 - 49056638
15132