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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49220950_49222461_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
49220950 - 49222461
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TAAACCTGAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAACC
Flanking Amino Acid:
MSTKGDSLKGLLLVVLLVS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
56.9
0.16
1.1
51.1
42.1
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
69
0.58
1.7
77.46
38.9

Associated Gene:

Gene:
PRL
Ensembl Gene ID:
ENSAPLG00000012059
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012553
49220922 - 49226738
5817