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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49222644_49223047_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49222644 - 49223047
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGCTGATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATATCAATAACG
Flanking Amino Acid:
FLSSEMFNEFDERYAQGRGF
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
73.4
0.53
0.9
66.1
39.9
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
54.7
0.01
2
65.6
41.3

Associated Gene:

Gene:
PRL
Ensembl Gene ID:
ENSAPLG00000012059
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012553
49220922 - 49226738
5817