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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49223156_49224462_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
49223156 - 49224462
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGGATGACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTATTTTAACT
Flanking Amino Acid:
EDKEQAQQIHHEDLLNLVLG
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
56.8
0.15
1.2
48.1
48.1
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
74.3
0.84
1.2
85.02
35.1

Associated Gene:

Gene:
PRL
Ensembl Gene ID:
ENSAPLG00000012059
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012553
49220922 - 49226738
5817