Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4924052_4927426_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4924052 - 4927426

Intron Length:

3375

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TATCTTTCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTCCACTTAACC

Flanking Amino Acid:

TPAELSTAPCRDVKAGNILL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

1.2

Major BPS

81.8

0.79

1.1

34.5

Major PPT

81.6

0.71

0.8

77.1

31.1

Minor 5ss

32.8

-2

2.7

42.5

44.3

Minor BPS

70.5

0.62

1.5

77.28

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003878

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040626

4923759 - 5048193

124435

ENSAPLT00000038229

4923759 - 4949055

25297