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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4927483_4934393_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4927483 - 4934393
Intron Length:
6911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTGTTCTTAACC
Flanking Amino Acid:
LGEDGSVQIADFGVSAFLAT
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
84.4
0.77
0.8
81
36.6
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
78.4
0.87
1.1
78.7
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003878
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040626
4923759 - 5048193
124435
ENSAPLT00000038229
4923759 - 4949055
25297
ENSAPLT00000004054
4893703 - 4948969
55267