Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4937957_4940502_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4937957 - 4940502

Intron Length:

2546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCAGG

5'SS Class:

strong_major

3'SS Sequence:

GTGATTCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

ATAGACGTGATT

Flanking Amino Acid:

APYHKYPPMKVLMLTLQNDP

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.8

43.8

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

75.6

0.58

45.2

Minor 5ss

33.3

-1.9

2.8

39.7

45.9

Minor BPS

-0.3

2.2

62.57

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003878

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040626

4923759 - 5048193

124435

ENSAPLT00000038229

4923759 - 4949055

25297

ENSAPLT00000004054

4893703 - 4948969

55267