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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49387640_49449202_R

Intron Information:

Intron Rank:
141128
Intron Class:
major
Intron Phase:
Intron Coordinates:
49387640 - 49449202
Intron Length:
61563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036224
49386372 - 49526446
140075