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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4940637_4944483_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4940637 - 4944483
Intron Length:
3847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
AGGGTATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATTTTCAGAGGC
Flanking Amino Acid:
SSCLQKDPEKSNVNVFFFFF
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
68.2
0.41
1.1
62.9
47
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
42.8
-0.5
2.1
58.37
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003878
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004054
4893703 - 4948969
55267