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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49414666_49449202_R

Intron Information:

Intron Rank:
141125
Intron Class:
major
Intron Phase:
Intron Coordinates:
49414666 - 49449202
Intron Length:
34537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ACCTTGTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TATATCATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
67.2
0.39
1
61.4
38.7
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
56.3
0.27
1.7
76.41
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034120
49413622 - 49526446
112825