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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4944596_4944841_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4944596 - 4944841
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
TTGTGCTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TCTTCTTGACAT
Flanking Amino Acid:
APTITERSKKVRRVPGSSGR
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
67.6
0.44
1.2
75
40
Major PPT
66.6
0.37
1.1
62.8
43
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
52.5
0.16
1.8
73.72
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003878
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040626
4923759 - 5048193
124435
ENSAPLT00000038229
4923759 - 4949055
25297
ENSAPLT00000004054
4893703 - 4948969
55267