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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49449284_49523697_R

Intron Information:

Intron Rank:
141126
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
49449284 - 49523697
Intron Length:
74414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTAAACATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.7
0.4
1
64.5
41.5
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
69.5
0.59
1.3
74.65
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037562
49449203 - 49528487
79285
ENSAPLT00000036224
49386372 - 49526446
140075
ENSAPLT00000034120
49413622 - 49526446
112825