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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49621523_49634507_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49621523 - 49634507
Intron Length:
12985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCTTCTGACTT
Flanking Amino Acid:
RNIPCAVHSQIPQFAA*
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81.5
0.71
0.8
77.8
30.2
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
56.8
0.29
1.7
75.82
41.6

Associated Gene:

Gene:
CDKAL1
Ensembl Gene ID:
ENSAPLG00000005820
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006034
49621502 - 50106635
485134