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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49625393_49634507_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49625393 - 49634507
Intron Length:
9115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TTTGCTTACACT
Flanking Amino Acid:
RNIPCAVHSQVSYCTGRDTI
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
77.8
0.63
0.8
71.5
33
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
51.8
0.14
2.2
78.9
44

Associated Gene:

Gene:
CDKAL1
Ensembl Gene ID:
ENSAPLG00000005820
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024180
49625294 - 50106635
481342