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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49634631_49715579_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49634631 - 49715579
Intron Length:
80949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
ATGTTCTAAACA
Flanking Amino Acid:
AKGEVSGLTEIFRQTKEDSL
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
67.7
0.4
1.1
63.4
41.6
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
65
0.47
1.7
72.97
39.3

Associated Gene:

Gene:
CDKAL1
Ensembl Gene ID:
ENSAPLG00000005820
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020209
49630486 - 50106635
476150
ENSAPLT00000006034
49621502 - 50106635
485134
ENSAPLT00000024180
49625294 - 50106635
481342