Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49691533_49715579_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49691533 - 49715579

Intron Length:

24047

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

CATTTCTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTCGTCTTAATA

Flanking Amino Acid:

AKGEVSGLTEEFRHAPRNGT

Intron Amino Acid Position:

567

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.7

88.4

18.8

Major BPS

0.92

0.9

86.2

29.1

Major PPT

81.5

0.71

0.8

75.9

32.3

Minor 5ss

29.6

-2.3

2.6

32.7

42.2

Minor BPS

70.1

0.63

1.3

74.1

38.6

Associated Gene:

Gene:

CDKAL1

Ensembl Gene ID:

ENSAPLG00000005820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029323

49691326 - 50106635

415310