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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49714091_49715579_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
49714091 - 49715579
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTAACGATAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATGTAACG
Flanking Amino Acid:
AKGEVSGLTEGQHMSSDTIC
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
55.7
0.13
1.1
47.9
43.5
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
48.9
-0.2
2.2
64.89
42.9

Associated Gene:

Gene:
CDKAL1
Ensembl Gene ID:
ENSAPLG00000005820
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029326
49713986 - 50106635
392650