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Intron Name: Anas_platyrhynchos_platyrhynchos_2_49715745_49719753_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49715745 - 49719753

Intron Length:

4009

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTATTTGAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TTATCTTTATTT

Flanking Amino Acid:

YVAHNPFYEQVLVPKDPVLM

Intron Amino Acid Position:

488

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.8

85.6

24.6

Major BPS

84.6

0.86

41.2

Major PPT

67.7

0.4

1.2

70.5

38.9

Minor 5ss

34.4

-1.8

2.8

41.8

44.8

Minor BPS

70.4

0.72

1.5

84.48

36.6

Associated Gene:

Gene:

CDKAL1

Ensembl Gene ID:

ENSAPLG00000005820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024180

49625294 - 50106635

481342

ENSAPLT00000020209

49630486 - 50106635

476150

ENSAPLT00000006034

49621502 - 50106635

485134

ENSAPLT00000029326

49713986 - 50106635

392650

ENSAPLT00000029323

49691326 - 50106635

415310