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Intron Name: Anas_platyrhynchos_platyrhynchos_2_49719838_49763240_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49719838 - 49763240

Intron Length:

43403

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGACAG

5'SS Class:

major

3'SS Sequence:

TTTTATTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTGTCTTTTATT

Flanking Amino Acid:

RVVHELWRTEVGERQRVLVT

Intron Amino Acid Position:

484

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

62.5

43.8

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

0.95

0.7

84.8

35.4

Minor 5ss

29.9

-2.3

3.3

37.9

Minor BPS

68.7

0.67

1.6

83.31

38.3

Associated Gene:

Gene:

CDKAL1

Ensembl Gene ID:

ENSAPLG00000005820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029326

49713986 - 50106635

392650

ENSAPLT00000029323

49691326 - 50106635

415310