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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49719838_49783343_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49719838 - 49783343
Intron Length:
63506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTCTTTTATT
Flanking Amino Acid:
FHSYNPYDHKVGERQRVLVT
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
68.7
0.67
1.6
83.31
38.3

Associated Gene:

Gene:
CDKAL1
Ensembl Gene ID:
ENSAPLG00000005820
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024180
49625294 - 50106635
481342
ENSAPLT00000020209
49630486 - 50106635
476150
ENSAPLT00000006034
49621502 - 50106635
485134