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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49763313_49783343_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49763313 - 49783343
Intron Length:
20031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTCTTTCAACA
Flanking Amino Acid:
FHSYNPYDHKQKGKLLHLCL
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.2
0.77
0.8
81.3
29.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
65.3
0.48
1.5
76.67
34

Associated Gene:

Gene:
CDKAL1
Ensembl Gene ID:
ENSAPLG00000005820
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029326
49713986 - 50106635
392650
ENSAPLT00000029323
49691326 - 50106635
415310