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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49783407_49798422_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49783407 - 49798422
Intron Length:
15016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TATTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AGTTTATTAATA
Flanking Amino Acid:
AKMHQVPAAVKKQRTKDLSQ
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.7
0.78
0.8
81.6
35.4
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
63.9
0.43
1.5
71.5
34.1

Associated Gene:

Gene:
CDKAL1
Ensembl Gene ID:
ENSAPLG00000005820
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024180
49625294 - 50106635
481342
ENSAPLT00000020209
49630486 - 50106635
476150
ENSAPLT00000006034
49621502 - 50106635
485134
ENSAPLT00000029326
49713986 - 50106635
392650
ENSAPLT00000029323
49691326 - 50106635
415310