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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4980960_4982313_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4980960 - 4982313
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CACCCTCTAACA
Flanking Amino Acid:
FCCKICGKKLSLQNYAALRG
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
50
-0
1.7
58.48
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000980
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021446
4976564 - 4996198
19635
ENSAPLT00000018217
4976564 - 5016398
39835
ENSAPLT00000047837
4976564 - 4999790
23227