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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4982439_4991458_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4982439 - 4991458
Intron Length:
9020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGTTATTAAACT
Flanking Amino Acid:
SQKSIASHKKPLLKEVCASC
Intron Amino Acid Position:
1581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.4
0.82
0.7
84.4
23.4
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
57.1
0.3
1.8
76.07
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000980
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021446
4976564 - 4996198
19635