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Intron Name: Anas_platyrhynchos_platyrhynchos_2_49830424_49845460_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

49830424 - 49845460

Intron Length:

15037

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

GAATAACTCATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTTTGAATAACT

Flanking Amino Acid:

NPPYILEHLEEMAKILNHPR

Intron Amino Acid Position:

330

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.7

33.7

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

56.2

0.14

47.6

39.9

Minor 5ss

32.8

-2

2.9

39.4

46.1

Minor BPS

56.1

0.27

2.3

86.43

39.1

Associated Gene:

Gene:

CDKAL1

Ensembl Gene ID:

ENSAPLG00000005820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024180

49625294 - 50106635

481342

ENSAPLT00000020209

49630486 - 50106635

476150

ENSAPLT00000006034

49621502 - 50106635

485134

ENSAPLT00000029326

49713986 - 50106635

392650

ENSAPLT00000029323

49691326 - 50106635

415310