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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49917390_49950462_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49917390 - 49950462
Intron Length:
33073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATCTCCTAAACA
Flanking Amino Acid:
PLIEIISINTGCLNACTYCK
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
67.4
0.39
1
62.9
36.9
Minor 5ss
37.6
-1.4
3
44.8
42.9
Minor BPS
70.7
0.65
1.7
77.53
39.6

Associated Gene:

Gene:
CDKAL1
Ensembl Gene ID:
ENSAPLG00000005820
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029323
49691326 - 50106635
415310
ENSAPLT00000024180
49625294 - 50106635
481342
ENSAPLT00000020209
49630486 - 50106635
476150
ENSAPLT00000006034
49621502 - 50106635
485134
ENSAPLT00000029326
49713986 - 50106635
392650