Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4993392_4993502_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4993392 - 4993502

Intron Length:

111

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTTTGAAAC

5'SS Class:

weak_major

3'SS Sequence:

CTGCCCGGTGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACATCAA

U12 Branch Point Sequence:

ACATCAAGAAAG

Flanking Amino Acid:

MKGDVKGARWLFETEPLDSF

Intron Amino Acid Position:

986

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.8

0.02

1.2

53.2

37.7

Major BPS

57.7

0.19

1.1

Major PPT

46.7

-0.1

1.7

49.5

39.2

Minor 5ss

39.1

-1.2

2.8

54.9

42.2

Minor BPS

40.6

-0.8

1.9

43.75

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000000980

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042989

4988465 - 4996481

8017

ENSAPLT00000039591

4988465 - 4999432

10968