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Intron Name: Anas_platyrhynchos_platyrhynchos_2_49950584_49967429_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49950584 - 49967429

Intron Length:

16846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAAT

5'SS Class:

strong_major

3'SS Sequence:

GCTTCATTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

TTGTGCTTCATT

Flanking Amino Acid:

VVEVVEETIKGHSVRLLGQK

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.99

0.8

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

68.4

0.41

1.1

36.9

Minor 5ss

-1

2.9

56.9

47.4

Minor BPS

56.4

0.28

2.2

79.19

43.7

Associated Gene:

Gene:

CDKAL1

Ensembl Gene ID:

ENSAPLG00000005820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006034

49621502 - 50106635

485134

ENSAPLT00000029326

49713986 - 50106635

392650

ENSAPLT00000029323

49691326 - 50106635

415310

ENSAPLT00000024180

49625294 - 50106635

481342

ENSAPLT00000020209

49630486 - 50106635

476150